PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 420aa MW: 41596.9 Da PI: 6.32

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA021777-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	215	260	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq BGIOSGA021777-PA 215 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	208	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.62E-13	208	264	No hit	No description
PROSITE profile	PS50888	17.282	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	215	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS 60 QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD 120 RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA 180 ASGGTAPVTS SGGGGTAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA 240 NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGSGGK 300 ASKGGTGGEG GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL 360 ASAISSATSS ASLLSRPSIR HAGAPPQTML DAAGPTSPAA MSNGDDPRHA KADGGAGGTQ

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA  180
ASGGTAPVTS SGGGGTAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA  240
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGSGGK  300
ASKGGTGGEG GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL  360
ASAISSATSS ASLLSRPSIR HAGAPPQTML DAAGPTSPAA MSNGDDPRHA KADGGAGGTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	224	RLRRER
2	305	321	TGGEGGGGGGGGGGGGT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005919	0.0	AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0HLU5	0.0	A0A0E0HLU5_ORYNI; Uncharacterized protein
TrEMBL	B8B3I6	0.0	B8B3I6_ORYSI; Uncharacterized protein
STRING	ONIVA06G06250.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-38	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]