PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA021243-PA

Common Name

OsI_22977

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 504aa MW: 57418.8 Da PI: 8.6021

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA021243-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.8	8.3e-14	31	117	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 +fY++YA+++ F+++ks+s+k r+ +C++eg++ ++ + ++++ r++++tgCka +kv+ ++ + + ++l+HnH+l BGIOSGA021243-PA 31 NFYQKYAYHASFDIKKSRSRKV-------IREVCCTREGRHVSKVAD-CDREQYRSSKKTGCKAYVKVRHNYvdgmVTSMVFDVVDLQHNHPL 115 6**************99987.......6889******9999.99999**************973322334555667****9 PP FAR1 90 ap 91 +p BGIOSGA021243-PA 116 TP 117 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-9	31	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MGLEQVVGAF VAPHMVPTEG MSFATYDEAY NFYQKYAYHA SFDIKKSRSR KVIREVCCTR 60 EGRHVSKVAD CDREQYRSSK KTGCKAYVKV RHNYVDGMVT SMVFDVVDLQ HNHPLTPSPS 120 TVKHMRVHKN RDDMVMQFVD MMQESHVPQN YIMGVLSKLH GGQDKIPFTT RDIENMKDAN 180 VRKENTDDTN KLLEFFRECT LQNPKFYWDA QLDEDGVLKN LFWSHASSQA EFADFADAVT 240 FDTTYKTNIY EMSLAMFVGI FCTHLHLAFV HVQLEKIPAA YILKRYTKKA KSDMPFDRRD 300 RDSTSPDGVE ENYRSNMMII EAFRVVKAAC KSKVAYGRAM AVLKGLRSQS RTYHVTLQSP 360 KSHTKGSMRG PDEEVTLGAK GKKLCTRECG WCHLRDGHYA NTCPKNPVNF DKIRKVANRE 420 RGKRGRPRGS GRGRGCGVTT CGAARGNGAR ITRRNGGSDH TLRRCLEDEW ESMGNNAGND 480 ELDKTDGDDV DPDETFGWEE NESY

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MGLEQVVGAF VAPHMVPTEG MSFATYDEAY NFYQKYAYHA SFDIKKSRSR KVIREVCCTR  60
EGRHVSKVAD CDREQYRSSK KTGCKAYVKV RHNYVDGMVT SMVFDVVDLQ HNHPLTPSPS  120
TVKHMRVHKN RDDMVMQFVD MMQESHVPQN YIMGVLSKLH GGQDKIPFTT RDIENMKDAN  180
VRKENTDDTN KLLEFFRECT LQNPKFYWDA QLDEDGVLKN LFWSHASSQA EFADFADAVT  240
FDTTYKTNIY EMSLAMFVGI FCTHLHLAFV HVQLEKIPAA YILKRYTKKA KSDMPFDRRD  300
RDSTSPDGVE ENYRSNMMII EAFRVVKAAC KSKVAYGRAM AVLKGLRSQS RTYHVTLQSP  360
KSHTKGSMRG PDEEVTLGAK GKKLCTRECG WCHLRDGHYA NTCPKNPVNF DKIRKVANRE  420
RGKRGRPRGS GRGRGCGVTT CGAARGNGAR ITRRNGGSDH TLRRCLEDEW ESMGNNAGND  480
ELDKTDGDDV DPDETFGWEE NESY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882211.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8B2F6	0.0	B8B2F6_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-27	FAR1-related sequence 5