PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020831-PA
Common NameOsI_23800
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 342aa    MW: 37821.4 Da    PI: 8.8675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020831-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.5e-11241201396
                       TT-EE--HHH.HTT..............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3  13 sgrlvlpkkfaeeh..............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                       ++rl++p +fa++               +   e   +   + +  + g++W+v+l+  +++ +    +l++GW+e + a+gL eg  vv++l+
  BGIOSGA020831-PA  24 LHRLSVPGEFAARLddddaagvgeeeeeE---EsgrRAAAVLVVCPLGKVWRVELR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLE 111
                       5899*******999999999987654432...1444566777778**********5..54444447*************************99 PP

                       SSSEE..EEEE CS
                B3  86 grsefelvvkv 96 
                       +r  +   ++v
  BGIOSGA020831-PA 112 RRGVA--SLRV 120
                       87666..4444 PP
2B3443.9e-14147236397
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       k l ++d      + +p kf+++h  +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +
  BGIOSGA020831-PA 147 KLLQQEDL---EKMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--T 232
                       55533333...3478**********944445667899999**********..999999****************************9999..6 PP

                       EEEE CS
                B3  94 vkvf 97 
                       v vf
  BGIOSGA020831-PA 233 VEVF 236
                       6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1310124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1112126IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-414124IPR003340B3 DNA binding domain
PfamPF023623.0E-825116IPR003340B3 DNA binding domain
CDDcd100175.50E-966114No hitNo description
PROSITE profilePS508639.30568124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20140241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-20141245IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407142239IPR003340B3 DNA binding domain
CDDcd100178.63E-16143236No hitNo description
SMARTSM010191.0E-6145239IPR003340B3 DNA binding domain
PfamPF023624.4E-11153236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EEESGRRAAA  60
VLVVCPLGKV WRVELRRSPA GDGEAWLGGG WSELAAAHGL GEGWGVVLRL ERRGVASLRV  120
FDPGFCLARF CTPHAGMRTK DRPRFIKLLQ QEDLEKMKIP EKFVQQHLTE TYTNNHQNAI  180
IVCPLGKFWR VELQREQPDV LLRDGWAPFL AAHDLSEGNI LLFRYEGNMV FTVEVFLQNG  240
CLKEYKTAAL YLTDGTEGPS NAPQQSAAKV GVSPVKRKRT RRIEGTCLEG PNRKSRASPI  300
SVKVEPHKKH VSIVSQNSFT KEMTAYSIHS LLVSASASAV FI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA2YFB10.0A2YFB1_ORYSI; Uncharacterized protein
STRINGOGLUM06G22930.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-12B3 family protein