PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020786-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 323aa    MW: 35007.1 Da    PI: 6.323
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020786-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-072602932154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  BGIOSGA020786-PA 260 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 293
                       569*****************************87 PP
2ELK29.31.9e-10214235122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++L+++++E++
  BGIOSGA020786-PA 214 ELKHELKQGYREKLVDIREEIL 235
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194589IPR005540KNOX1
PfamPF037901.6E-164885IPR005540KNOX1
SMARTSM012561.1E-25103158IPR005541KNOX2
PfamPF037916.8E-17111157IPR005541KNOX2
PfamPF037893.0E-6214235IPR005539ELK domain
PROSITE profilePS5121310.196214234IPR005539ELK domain
SMARTSM011880.0014214235IPR005539ELK domain
PROSITE profilePS5007111.596234297IPR001356Homeobox domain
SuperFamilySSF466899.41E-16236300IPR009057Homeodomain-like
SMARTSM003893.3E-10236301IPR001356Homeobox domain
CDDcd000865.97E-11237298No hitNo description
Gene3DG3DSA:1.10.10.602.5E-24241298IPR009057Homeodomain-like
PfamPF059203.5E-18254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL  60
LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAATAAAAA AAAGGAPSGG EELDLFMTHY  120
VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QTLQSLTGAS PGEGSGATMS DDEDNQVDSE  180
SNMFDGNDGS DGMGFGPLML TEGERSLVER VRQELKHELK QGYREKLVDI REEILRKRRA  240
GKLPGDTAST LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA  300
SSSSDKSKRK RSNAGDGKAE QSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290310RKRNWHSNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.46080.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO141491380.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 2 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 4 is expressed in leaf blades and at lower levels in flowers. {ECO:0000269|PubMed:12034492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644389.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW40.0KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0E0HU540.0A0A0E0HU54_ORYNI; Uncharacterized protein
STRINGOS06T0646600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-140KNOTTED1-like homeobox gene 3