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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA020731-PA |
| Common Name | OsI_24014 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
SBP |
| Protein Properties |
Length: 344aa MW: 37431.4 Da PI: 7.7435 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA020731-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 116.3 | 1.6e-36 | 67 | 144 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC +l key+r+h+vCe h+k+ v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+
BGIOSGA020731-PA 67 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 144
6**************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MECNPVSSST TSSSLLWDWD ATASAEPPPP PGKRGGRDSS SASASAKRGR SAAAAGDAAA 60
VAAEAPRCQV EGCGLELGGY KEYYRKHRVC EPHTKCLRVV VAGQDRRFCQ QCSRFHAPSE 120
FDQEKRSCRR RLSDHNARRR KPQTDVFAFG SGTLPRSLFD DRQQISFAWD NNAPLNHANT 180
TSSSSWTSDL QLSQVMDISK RSRKAGADSA NIRLSNALPT LCHDTNELLP IKGADASETA 240
SKLDGALDVQ RALSLLSASS RGLTDPGHQT SSIIQFTNSN QNSTLPSVPS EGNSNVPFWV 300
DGQHQAVEPQ VFQFTMDTGN TVFPDLERIK PSYESSMFGL NQIH
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
