PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020603-PA | ||||||||
Common Name | HOX18, OsI_023462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 27595 Da PI: 9.2567 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7e-18 | 114 | 168 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k BGIOSGA020603-PA 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 168 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 7.9e-38 | 114 | 202 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e eLr + BGIOSGA020603-PA 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELR-R 202 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 94 | 171 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-19 | 98 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 110 | 170 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-13 | 112 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-12 | 114 | 171 | No hit | No description |
Pfam | PF00046 | 3.4E-15 | 114 | 168 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 145 | 168 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.9E-9 | 170 | 202 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.3E-17 | 170 | 213 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEGEDLGSWL GLGIGGGGYA YGGDDCRRSP SSPSPVQMLF SQHVKEEITR GYDHGRDEEQ 60 ASGSKIMKGE RGARLRVMRS IRNSGGDGSR SRVLSLGDDG GDGGSGSGGG GGTRKKLQLT 120 KEQSTLLEDS FRVHNILSHA QKHELARQLK LKPRQVEVWF QNRRARTKLK QTEVDCEFLK 180 RCCESLTEEN KQLKHELMEL RRLASAAAAA AGSQLYVQFP RAAAAAMVNV CPSCEKVTVM 240 GGGGGETGKS SSSYSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 170 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005445 | 0.0 | AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643687.1 | 0.0 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | A2YGL9 | 0.0 | HOX18_ORYSI; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A0E0ADT9 | 0.0 | A0A0E0ADT9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G27470.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-46 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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