PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020556-PA
Common NameOsI_24421
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 692aa    MW: 78135.1 Da    PI: 7.3644
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020556-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.5e-2353149189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                       +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++       + k+rr+r   r gC a+ +v+k++   +w+vtk++ +H
  BGIOSGA020556-PA  53 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHH 145
                       6******************************************99999999999999999******************99************* PP

              FAR1  86 nHel 89 
                        H++
  BGIOSGA020556-PA 146 VHPV 149
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2153149IPR004330FAR1 DNA binding domain
PfamPF105515.0E-26272362IPR018289MULE transposase domain
PROSITE profilePS5096610.472551587IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-6561585IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MEGHRHGEAD DEEEELGLRL GLASAGASAA AAAAAGEPPS VGMEFPTSEA AREFYCAYAD  60
RAGFAVRTDK SRRSRRDDSV IMRRFVCTRE GFHPTRHDDL TESEAAAGKR RRKRLIIREG  120
CMAMCEVTKK EPPLRWVVTK FVAHHVHPVS LPLCPRPPPA GESDGLAGEH AAALDEPTQA  180
ATEPSDEPTG APAAVGNGAP NGGPSFCNRL VRANPAGVRA EVQDLLDYLR KMQAESPGFF  240
YAMQVDSGNC VTNVFWADAK ARMAYKSFGD AVTFDTTYRK TKYMMPFAVF RGINHHLQWI  300
IFGCCLLMDE TKSSYTWLFD TWLAAMGGRQ PDLLVTDQGK AMEAGIARVL PNTRHRFCQR  360
NILSLCKQKL SAVYIQHINL KADLRECVFG AETIEEFQAR WDYVIHKYNL EENTWLQSLY  420
DTRQQWAWVY QKGSFFPELL KSQRSERLNK FFKTHFNMKT PLLVLISRFD QVMALSFEKE  480
AQANFVTAYS KPTLKTPSVI ERQAAAIYTR AVFDIFQEEF IESLGYHADK IEDGVILKYN  540
VASEEENGRG YIVSFNQLDR KAECTCCKFE YAGILCRHVL RIFFMVGVRN LPEEYIMKRW  600
TMDAVSSVVP DERSLETGVS FPERLVAWYN DLSLDGLTYG MRGAMSPEVY KVAKAALQKA  660
FDDVLAAKYQ QMSEHQDMPL PKSQAKRTHT KA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641723.10.0protein FAR1-RELATED SEQUENCE 9
TrEMBLB8B2L10.0B8B2L1_ORYSI; Uncharacterized protein
STRINGOB06G34800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-139FAR1-related sequence 5