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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020556-PA | ||||||||
Common Name | OsI_24421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 78135.1 Da PI: 7.3644 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.9 | 3.5e-23 | 53 | 149 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ +H BGIOSGA020556-PA 53 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHH 145 6******************************************99999999999999999******************99************* PP FAR1 86 nHel 89 H++ BGIOSGA020556-PA 146 VHPV 149 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-21 | 53 | 149 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.0E-26 | 272 | 362 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.472 | 551 | 587 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.2E-6 | 561 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0012 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MEGHRHGEAD DEEEELGLRL GLASAGASAA AAAAAGEPPS VGMEFPTSEA AREFYCAYAD 60 RAGFAVRTDK SRRSRRDDSV IMRRFVCTRE GFHPTRHDDL TESEAAAGKR RRKRLIIREG 120 CMAMCEVTKK EPPLRWVVTK FVAHHVHPVS LPLCPRPPPA GESDGLAGEH AAALDEPTQA 180 ATEPSDEPTG APAAVGNGAP NGGPSFCNRL VRANPAGVRA EVQDLLDYLR KMQAESPGFF 240 YAMQVDSGNC VTNVFWADAK ARMAYKSFGD AVTFDTTYRK TKYMMPFAVF RGINHHLQWI 300 IFGCCLLMDE TKSSYTWLFD TWLAAMGGRQ PDLLVTDQGK AMEAGIARVL PNTRHRFCQR 360 NILSLCKQKL SAVYIQHINL KADLRECVFG AETIEEFQAR WDYVIHKYNL EENTWLQSLY 420 DTRQQWAWVY QKGSFFPELL KSQRSERLNK FFKTHFNMKT PLLVLISRFD QVMALSFEKE 480 AQANFVTAYS KPTLKTPSVI ERQAAAIYTR AVFDIFQEEF IESLGYHADK IEDGVILKYN 540 VASEEENGRG YIVSFNQLDR KAECTCCKFE YAGILCRHVL RIFFMVGVRN LPEEYIMKRW 600 TMDAVSSVVP DERSLETGVS FPERLVAWYN DLSLDGLTYG MRGAMSPEVY KVAKAALQKA 660 FDDVLAAKYQ QMSEHQDMPL PKSQAKRTHT KA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641723.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 | ||||
TrEMBL | B8B2L1 | 0.0 | B8B2L1_ORYSI; Uncharacterized protein | ||||
STRING | OB06G34800.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-139 | FAR1-related sequence 5 |