 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA020424-PA |
| Common Name | OsI_21119 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
GATA |
| Protein Properties |
Length: 277aa MW: 28177 Da PI: 7.4509 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA020424-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 62.9 | 3.9e-20 | 154 | 188 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++
BGIOSGA020424-PA 154 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 188
********************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPPSTVEES AAYDDHSTVT 60
TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAAAAPAANH GAPVPAHYPS LSAATVSWDA 120
TAESYYCGQQ GRPATGAAKC AAGAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG 180
IRYKKEERRA AATTTTADGA AGCGFITAQR GRGSTAAKAA PAVTTCGEET SPYVVGGGGG 240
EVANAAYLAW RLNVVPPAAT ATAFSVWPER ASLYHYN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073464 | 0.0 | AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence. |
| GenBank | AK101287 | 0.0 | AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence. |
| GenBank | DQ784546 | 0.0 | DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds. |
