PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020420-PA
Common NameOsI_21105
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25160.3 Da    PI: 10.2501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020420-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.2e-1386137657
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       ++++ q ++L e+++ n+ ++ ++++eLA++l+L  +qV  WF NrR + k+
  BGIOSGA020420-PA  86 RLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQ 137
                       67899********************************************996 PP
2HD-ZIP_I/II69.28.8e-2383169289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       ++rrls+ q+k+L+e ++ ++ +++++K+ela +L+l+  qv+ WF nrR R k+k +E+++++Lk+++++lk en+rL+ +ve+Lr+
  BGIOSGA020420-PA  83 NHRRLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQKSTEMECAYLKECFNKLK-ENHRLQLQVEQLRS 169
                       579********************************************************************97.56789999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-1362137IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1374139IPR009057Homeodomain-like
PROSITE profilePS5007113.66978138IPR001356Homeobox domain
SMARTSM003896.3E-881142IPR001356Homeobox domain
CDDcd000861.22E-885139No hitNo description
PfamPF000468.7E-1186137IPR001356Homeobox domain
SMARTSM003401.1E-5138180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLDL DRPYAREELP  60
QQGGSMEVQK GEERGSVRHN SSNHRRLSRV QSKQLDEFYR VNHAVDSKQK KELADRLNLR  120
ISQVDAWFRN RRLRSKQKST EMECAYLKEC FNKLKENHRL QLQVEQLRST SLQLQLQLQL  180
HSERVATAPT GQQAGTSAAA RIFTLPLSGY NPSRGTWFSP NAH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-151CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638698.11e-147homeobox-leucine zipper protein HOX3
TrEMBLA0A0E0HIW61e-165A0A0E0HIW6_ORYNI; Uncharacterized protein
TrEMBLA2Y7T61e-165A2Y7T6_ORYSI; Uncharacterized protein
STRINGONIVA05G28880.11e-165(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1906588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.18e-22homeobox-leucine zipper protein 17