PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA020285-PA

Common Name

OsI_20818

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 344aa MW: 35364.4 Da PI: 9.9973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA020285-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.1e-06	240	280	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L BGIOSGA020285-PA 240 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 280 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.259	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-10	237	285	No hit	No description
SuperFamily	SSF47459	1.44E-12	237	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-9	240	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD RFAFPNVAET 60 TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT ALPPSKRKLP 120 EKYPVVGTSS TTKTTTTSET AAERRSTKRA AGGSSSITFG GGRHGAGAAA ALLGLGRGYE 180 PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR ISSDPQTVAA 240 RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL GNGNGNGNLL 300 HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD RFAFPNVAET  60
TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT ALPPSKRKLP  120
EKYPVVGTSS TTKTTTTSET AAERRSTKRA AGGSSSITFG GGRHGAGAAA ALLGLGRGYE  180
PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR ISSDPQTVAA  240
RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL GNGNGNGNLL  300
HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	226	RPRRK
2	240	245	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638480.1	1e-179	transcription factor LATE FLOWERING
Swissprot	A0A0P0WQ90	1e-180	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	B8AW73	0.0	B8AW73_ORYSI; Uncharacterized protein
STRING	OGLUM05G25760.1	0.0	(Oryza glumipatula)
STRING	ORGLA05G0208300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-28	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]