PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA020074-PA

Common Name

OsI_20391

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRAS

Protein Properties

Length: 493aa MW: 51638.4 Da PI: 6.1964

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA020074-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	278.1	2.6e-85	117	484	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+ayf++A+aarl++s+ ++++ ++p ++ aa++++++v P+ ++ BGIOSGA020074-PA 117 IALLMECAAAMSVGNLAGANGALLELSQMASPYAaSCGERLVAYFARAMAARLVGSWVGVVAPMAPPPSC----GAINAAFRALYNVAPFARL 205 689****************************96778*******************999888885....6777899******** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++l++NqaIlea++g++ vHi+D+d+ G lQW++Ll aLa+Rp+gpp +R+Tg+g s+ l+ tg++La +A++l ++fef +++ + BGIOSGA020074-PA 206 AYLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVAKR 294 **********************988447**********************....9**********************8777 PP GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsle 272 ++ + ++ ++ gEa+aV++ h ++d ++ ++lv+ l+P v++veqe h+++ +Fl+rf++al++ysa+fd++ BGIOSGA020074-PA 295 PGDADAVADMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----SMRLVRWLEPAAVTLVEQERAHGGGgghgRFLDRFVSALHHYSAVFDAMG 381 777778888855555****98..777755555555....99*************99955445669***************9 PP GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgW 362 a+ p + r+ E+ +lgrei nv+a g +r +e ++Wre l + GF + + a+l+ + ++ + gy+v + +g++ lgW BGIOSGA020074-PA 382 ASRPDGEdASRHLAEHGVLGREIANVLAVGGPARSSGREGPGSWREVLARHGFAHAGGGGGG--RAQLVAAACPgGLGYTVAGDhDGTVRLGW 472 9988877689999************************************998887765..5667888999899*66166666* PP GRAS 363 kdrpLvsvSaWr 374 k+ pL++vSaW+ BGIOSGA020074-PA 473 KGTPLYAVSAWT 484 ***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.281	90	464	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-83	117	484	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MQDSLGLMQF HDHHQYLYSS SSSNLPLQQP LLSHHHRFLE ANEGCAGEDD SPEFVEPPAA 60 AAAAGMFEQR PELGACKEVY SEEGGAAEER TGVAMAGADV EQVAVEDEEE AHGVRMIALL 120 MECAAAMSVG NLAGANGALL ELSQMASPYA ASCGERLVAY FARAMAARLV GSWVGVVAPM 180 APPPSCGAIN AAFRALYNVA PFARLAYLAC NQAILEAFHG KRLVHIVDLD VVPGGALQWL 240 SLLPALAARP GGPPVIRVTG FGMSASVLHD TGNQLAGLAR KLCMSFEFYA VAKRPGDADA 300 VADMPGRRPG EAVAVHWLRH AMYDAAGDDG ASMRLVRWLE PAAVTLVEQE RAHGGGGGHG 360 RFLDRFVSAL HHYSAVFDAM GASRPDGEDA SRHLAEHGVL GREIANVLAV GGPARSSGRE 420 GPGSWREVLA RHGFAHAGGG GGGRAQLVAA ACPGGLGYTV AGDHDGTVRL GWKGTPLYAV 480 SAWTWCSPPH ARA

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MQDSLGLMQF HDHHQYLYSS SSSNLPLQQP LLSHHHRFLE ANEGCAGEDD SPEFVEPPAA  60
AAAAGMFEQR PELGACKEVY SEEGGAAEER TGVAMAGADV EQVAVEDEEE AHGVRMIALL  120
MECAAAMSVG NLAGANGALL ELSQMASPYA ASCGERLVAY FARAMAARLV GSWVGVVAPM  180
APPPSCGAIN AAFRALYNVA PFARLAYLAC NQAILEAFHG KRLVHIVDLD VVPGGALQWL  240
SLLPALAARP GGPPVIRVTG FGMSASVLHD TGNQLAGLAR KLCMSFEFYA VAKRPGDADA  300
VADMPGRRPG EAVAVHWLRH AMYDAAGDDG ASMRLVRWLE PAAVTLVEQE RAHGGGGGHG  360
RFLDRFVSAL HHYSAVFDAM GASRPDGEDA SRHLAEHGVL GREIANVLAV GGPARSSGRE  420
GPGSWREVLA RHGFAHAGGG GGGRAQLVAA ACPGGLGYTV AGDHDGTVRL GWKGTPLYAV  480
SAWTWCSPPH ARA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-90	97	484	1	379	Protein SCARECROW
5b3h_A	4e-90	101	484	4	378	Protein SCARECROW
5b3h_D	4e-90	101	484	4	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638651.1	0.0	protein SCARECROW
TrEMBL	A2Y5W8	0.0	A2Y5W8_ORYSI; Uncharacterized protein
STRING	ORUFI05G21990.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	5e-65	GRAS family protein