PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019936-PA
Common NameOsI_20114
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 319aa    MW: 33343.2 Da    PI: 6.2284
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019936-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.61.2e-373084660
            zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                       +cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  BGIOSGA019936-PA 30 PNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 84
                      68***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-302084IPR003851Zinc finger, Dof-type
PfamPF027019.7E-323084IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7233084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLAYAAAAGR RAVVVDHHQR RYRPNVEVAP NCPRCESPNT KFCYYNNYSL SQPRYFCKGC  60
RRYWTKGGSL RNVPVGGGCR KNRRGKAVRA MVGETMTARD GGGGGAAAFS HRFHGPVRPD  120
MILEGMAGST AASAGLGEQP GVAAPDEKPA AADGSTIDLA LLYAKFLNHH QPTMAEQGGG  180
AAVPESVDTS SGSSSDRTTS PAAAQPAAAA AYGPGQDGLV GEPISTEEHG AAAMARCAQA  240
LGELNFSVDQ ISCYTSLGLP TTDGGDLILP STLDQHAKYE PFDSLPEDAL SLHDIISGDD  300
DVWCNALGCQ GLEAALCRP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154641320.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638935.10.0uncharacterized protein LOC4338919
TrEMBLA0A0E0HF420.0A0A0E0HF42_ORYNI; Uncharacterized protein
TrEMBLB8AYU40.0B8AYU4_ORYSI; Uncharacterized protein
STRINGONIVA05G18960.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.15e-36Dof family protein