PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA019630-PA | ||||||||
Common Name | OsI_19481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 34601.7 Da PI: 7.1051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.5 | 1.8e-08 | 11 | 80 | 1 | 70 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70 l pG++ +P+d+elv + L ++++g++l+l i e+d +++ Pw+L + +++ +e +f +k+ + +++ BGIOSGA019630-PA 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80 579***************************888999987776478***743.3455678877776554332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-10 | 4 | 82 | IPR003441 | NAC domain |
SuperFamily | SSF53098 | 4.81E-13 | 151 | 280 | IPR012337 | Ribonuclease H-like domain |
PROSITE profile | PS50879 | 9.765 | 155 | 280 | IPR002156 | Ribonuclease H domain |
CDD | cd06222 | 4.36E-27 | 155 | 276 | No hit | No description |
Pfam | PF13456 | 2.1E-35 | 156 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.420.10 | 2.1E-4 | 157 | 279 | IPR012337 | Ribonuclease H-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090502 | Biological Process | RNA phosphodiester bond hydrolysis, endonucleolytic | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGDILEADPL SAPPPWNLLA 60 DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGGGLA FLPSIFPSPP 120 PVPRCSTPLS PSSPPFKPSR VIVRWWAPPG GWCKLNFDGS VYDDGSRRAS IGGVIRGCDG 180 GVVLAFAEIT EHWTVGVVEA RAMIRGLRLA LACFVERLVV EGDDLVLVQL IRGEETQTRI 240 PAAMHEEILD LLRCFADVEV RHIYREGNSV AHTLCRQAYV HPGLWTDCST LPAAVWEKID 300 DDLRGVVHER LCNKKKKSSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881581.1 | 1e-121 | uncharacterized protein LOC112939071 | ||||
TrEMBL | A2Y393 | 0.0 | A2Y393_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA05G0101300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2550 | 7 | 13 |