PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019620-PA
Common NameOsI_19467
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 439aa    MW: 45471.4 Da    PI: 7.6407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019620-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26239298258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  BGIOSGA019620-PA 239 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 298
                       8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-26230298IPR003657WRKY domain
PROSITE profilePS5081121.551233296IPR003657WRKY domain
SuperFamilySSF1182903.01E-24234298IPR003657WRKY domain
SMARTSM007748.1E-37238300IPR003657WRKY domain
PfamPF031069.7E-25239298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MHVFAPHQVT PLSVLLAAAA GGGFDRRDRS RVVGGGGGSR EGWEMDEVLA QISEGFRLAG  60
ELMSELAATQ NDPDYLAARC HAIAGAYAAA ARVLQGARHG GGGVGAASTS FGGEGYLHHQ  120
HRQQLDLLRM CVGGTAPDEA AAAANPFLGG GGGATTAAFR APSDAYGGAG AGTSGGPVRR  180
VSSSSRSPPS PVQPRQGGAG SRRRYITTSL FPLRWRESGE KVTVMVAAQR TGNTEQPPDD  240
GYTWRKYGQK DILGSRYPRS YYRCTHKNYY GCEAKKKVQR LDDDPFTYEV TYCGNHTCLT  300
STTPLLTLPA AAATSVTNSP TAAAVLGQDF VMAPAADQQP PQHQQAQPPL STSIHLGIGW  360
PMTPASLAGA VGEGSTSTTA TAPQVTTMGA TAAGGGGAAA RDADHYPVAD LADVMFNSGG  420
SGSSSIMDGI FSSHDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21239298968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.959350.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567644320.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878170.0AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638743.10.0WRKY transcription factor 55
TrEMBLB8AWM00.0B8AWM0_ORYSI; Uncharacterized protein
STRINGONIVA05G12080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-39WRKY DNA-binding protein 55