PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019308-PA
Common NameOsI_18753
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 850aa    MW: 94429.3 Da    PI: 6.0087
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019308-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.33.5e-05661721154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       rrkRt +++ q++e e++   ++ +  +a+  +  ++kl     ++t +q k+W  Nr+ak
  BGIOSGA019308-PA 661 RRKRTIMNDRQINEIEKALIDEPEMhkNAALLQAWSEKLsgqgsEITSSQLKNWLNNRKAK 721
                       89*****************986666115566899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-5643722IPR009057Homeodomain-like
PROSITE profilePS5007110.122658725IPR001356Homeobox domain
CDDcd000860.00382661724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MACILVQMID MVSVIEELSG LTSRELGEML KESENFVLQE KTEDGGTKQV DMEKLVSSLP  60
LHLLAVCLEL ERGSDLAYVL RGMRFLHSLS ELAARHTRLE QVLLDDVKLS EQVMDLIFFV  120
LSILSHWKKE NHLGVSPFIH SSLVAASLHL LTSYFSSQWH ELVHILLAHP KVDIFMDVAF  180
DSLHDDVRSL SHRLSTLSTN TFPVGPFDSR LTHFICQQCE ASLQFLLLLC QQKLFRDRIL  240
KNKELSRNGG ILSLSRSILK LGVPECLKGS IDIAASMSRL KAKILSILLQ LCEAETVSYL  300
DEVATSPKSM QLGQTLALEV LDLLKTAFGR KQKLTLDSHD KSYPMGSVLI SALRLVDVFS  360
DDSNFRSSFI TNTIPFLTQI LAIPHDEFVS NWCSVNLPVI EEDANLDYDP FGAAELALAA  420
AEQERDLFLQ KFQKYLVSGN PRSSVDHPAS ADLKATTVCR NLGSLSEYAR SLIPNNLLNE  480
EDVQLLSEFA YKLQTWCKSH VGQSTSQAVK IDPSSESKED FKPLQHPLIP STVVPDSSIN  540
NLPKNMEEPT PTNMEEPAPT PSTKQEGNAR DETPRSTVAL NGGFLQNSVG QDLVHLGVAR  600
TSSGFLGGGT STSTGSLRCK MDLDPASSSM DHFKTPDRKE SGLQDDEKGD THMYDERQPK  660
RRKRTIMNDR QINEIEKALI DEPEMHKNAA LLQAWSEKLS GQGSEITSSQ LKNWLNNRKA  720
KLARIAKERG VLSEGENADK PSTPATPHHC DSSESAGEES YLPPARVMSA LGISKGSRFV  780
SPDGNETTSQ AEFNQNIMLS RPFTRSFSFE PGRLVSLIDN DGKEVGRGKI FQVEGRLQGK  840
APDRYSRLHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.237600.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379881900.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116740.0AK111674.1 Oryza sativa Japonica Group cDNA clone:J013157O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640317.10.0nodulin homeobox isoform X1
RefseqXP_015640318.10.0nodulin homeobox isoform X1
RefseqXP_015640319.10.0nodulin homeobox isoform X1
TrEMBLB8AYW60.0B8AYW6_ORYSI; Uncharacterized protein
STRINGORGLA05G0052500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418