PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019238-PA
Common NameOsI_18582
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 313aa    MW: 35044.6 Da    PI: 9.8824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019238-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-0970119532
                       HHHHHHHHHHHHHHHHHHHHCTSCCC........................ CS
               HLH   5 hnerErrRRdriNsafeeLrellPkas......................k 32 
                       h+e+ErrRR+riN  +++Lr++lP a                       +
  BGIOSGA019238-PA  70 HSEAERRRRERINAHLATLRRILPDAKqdsdrntivkqritkhrnghliG 119
                       9************************8556666666655555555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.3665156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-106993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1070102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-770156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-671162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-10136165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10139159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.81E-6195251No hitNo description
Gene3DG3DSA:3.30.70.2608.8E-6196247No hitNo description
PROSITE profilePS5167110.394198278IPR002912ACT domain
CDDcd048732.17E-6200235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP RPSSSSGRSA  60
AAQATAMRIH SEAERRRRER INAHLATLRR ILPDAKQDSD RNTIVKQRIT KHRNGHLIGP  120
QEKRRNQMRE IDSEEMFQEM DKATLLASVV NQVKHLKTRA TEATTPSTAA TIPPEANEVT  180
VQCYAGGEHT AAARTYVRAT VSCDDRPGLL ADIAATFRRL RLRPLSADMS CLGGRTRHAF  240
VLCREEEEEE DAAAEARPLK EAVRQALAKV ALPETVYGGG GRSKRQRLMM ESRYSTAIVH  300
THVDPQYCWY NSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329958280.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241440.0AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAC1343410.0AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.11e-157putative transcription factor bHLH107
RefseqXP_015638378.11e-157putative transcription factor bHLH107
RefseqXP_015638379.11e-157putative transcription factor bHLH107
TrEMBLA2Y0Q70.0A2Y0Q7_ORYSI; Uncharacterized protein
STRINGONIVA05G04820.11e-157(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-10bHLH family protein