PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019117-PA
Common NameOsI_18309
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 292aa    MW: 32164.8 Da    PI: 4.8993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019117-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.6e-28152210259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  BGIOSGA019117-PA 152 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 210
                       69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-32144211IPR003657WRKY domain
SuperFamilySSF1182902.35E-24147210IPR003657WRKY domain
SMARTSM007744.2E-33151211IPR003657WRKY domain
PfamPF031069.8E-24153210IPR003657WRKY domain
PROSITE profilePS5081128.105153212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLAMFGHTP LFPLHHAAAA ADDDDDNDTS PLAIETSRGT CEVGSHGAMM AGSSESEYYS  60
EEEVGWEEEG LGSKGVEEKR EWALKRLDDL GKRGLYLFFL HLLPYACVVS VAEMTKMSSM  120
KADGSVPKRR RQDVQKVVVS LKDHKVEQGP PADSWSWRKY GQKPIKGSPH PRGYYKCSSY  180
RGCPARKQVD KCRNDASLLI ITYTSDHNHD NYAATTTNSV QEQAHNPDTS DPLSNGMSLA  240
EVVTVASSKL SGEEESCDFF DELEELPVSA SPLPSLSFMV QECSFSDART LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161532101672WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1029600.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567646770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364660.0CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-131probable WRKY transcription factor 69
TrEMBLA2Y0030.0A2Y003_ORYSI; Uncharacterized protein
STRINGOMERI05G02180.11e-133(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-32WRKY DNA-binding protein 65