PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019112-PA
Common NameOsI_18300
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 579aa    MW: 60859.1 Da    PI: 8.2579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019112-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09235256526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f+++G C+ Gd C +aHg
  BGIOSGA019112-PA 235 PCPEFRKGGSCRKGDACEYAHG 256
                       8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-748126IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-949151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.33749146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.50284119IPR002110Ankyrin repeat
PROSITE profilePS5010313.216230258IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5230257IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6235256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4235258IPR000571Zinc finger, CCCH-type
SMARTSM0035689266289IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAASLLLELA AADDVAAVRR VVEEEKVSLG VAGLWYGPSA SGVARLGMER RTAAMVAALY  60
GSTGVLGYVV AAAPAEAARA SETDGATPLH MAAAGGAANA VAATRLLLAA GASVDALSAS  120
GLRAGDLLPR ATAAEKAIRL LLKSPAVSPS SSPKKSASPP SPPPPQDAKK EYPPDLTLPD  180
LKSGLFSTDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRRYS YSCVPCPEFR  240
KGGSCRKGDA CEYAHGVFEC WLHPAQYRTR LCKDEVGCAR RICFFAHKPD ELRAVNPSAV  300
SVGMQPTVSS PRSSPPNGLD MAAAAAAMMS PAWPSSPASR LKTALGAREL DFDLEMLALD  360
QYQQKLFDKV SGAPSPRASW GAAANGLATA SPARAVPDYT DLLGSVDPAM LSQLHALSLK  420
QAGDMPAYSS MADTTQMHMP TSPMVGGANT AFGLDHSMAK AIMSSRASAF AKRSQSFIDR  480
GGRAPAARSL MSPATTGAPS ILSDWGSPDG KLDWGVQGDE LHKLRKSASF AFRGQSAMPV  540
ATHAAAAEPD VSWVNSLVKD GHAAGDIFAQ WPEQEQMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.117740.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2170309460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639743.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA2XZZ30.0A2XZZ3_ORYSI; Uncharacterized protein
STRINGOS05T0128200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-123C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]