PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 339aa MW: 36783.9 Da PI: 6.502

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018982-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + + Y++sLq BGIOSGA018982-PA 190 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 237 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.75E-11	184	241	No hit	No description
SuperFamily	SSF47459	1.57E-17	184	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.675	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-17	186	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MESLCGQLEH EHEQQLHPSS SSSLLPYCFL SAPEPLPVPG FPAGCSNLEE KAAAAMAAYE 60 YESSSCSSLD PTSMPMVYSP IVLQPQECPL SFVFDNAAAA AGDNKWVPGI QGSCPCSLGS 120 TQDMDASWGK SRKHKRSNVG LKGLEEKKAR RVVLHQHDDD VKKKAKEAAG GEPPAGYIHV 180 RARRGQATDS HSLAERVRRE KISERMKMLQ SLVPGCDKVT GKALMLDEII SYVQSLQNQV 240 EFLSMKLASL NPLMYEFGPG IDMHPDVLRQ LAKMPHEMVQ CMGQMGSTGI SLQGLGGGPT 300 GFAQDGSSHM NMVVMQVGEQ GQQQGSLHQV EMSSHCSFH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.23082	0.0	leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975882	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065864	0.0	AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640733.1	0.0	transcription factor bHLH63 isoform X1
Refseq	XP_015640734.1	0.0	transcription factor bHLH63 isoform X1
Refseq	XP_015640735.1	0.0	transcription factor bHLH63 isoform X1
Swissprot	Q93W88	2e-51	BH137_ARATH; Transcription factor bHLH137
TrEMBL	B8AWJ5	0.0	B8AWJ5_ORYSI; Uncharacterized protein
STRING	OGLUM05G00230.3	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16793	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	7e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]