 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA018905-PA |
| Common Name | OsI_18260 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
LBD |
| Protein Properties |
Length: 145aa MW: 14935 Da PI: 4.7543 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA018905-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 60.7 | 3.9e-19 | 11 | 66 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
l++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+la++++e
BGIOSGA018905-PA 11 WLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAE 66
5899************************************************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 145 aa
Download sequence Send
to blast |
MASSPLMSPS WLQELPEEQR ADAVSSMVYE ANARIRDPVY GCAGAICQLQ KQVNDLKAQL 60
ARAHAELAGA RAQHAHLVAL LCMEMAAAAP PQHPTTTAAA AAYCAAVGGA ASPAAPVDAL 120
YVVDGAGAAA MQASPIGWVD EPLWT
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079021 | 0.0 | AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence. |
| GenBank | AC093089 | 0.0 | AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
