PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA018293-PA | ||||||||
Common Name | OsI_19486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 24948.5 Da PI: 7.7903 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.4 | 9.5e-09 | 11 | 80 | 1 | 70 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70 l pG++ +P+d+elv + L ++++g++l+l i e+d +++ Pw+L + +++ +e +f +k+ + +++ BGIOSGA018293-PA 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80 579***************************888999987776478***743.3455678877776554332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-10 | 4 | 82 | IPR003441 | NAC domain |
Pfam | PF13456 | 9.8E-12 | 140 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGDILEADPL SAPPPWNLLA 60 DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGGGLA FLPSIFPSPP 120 PVPRCSTPLS PSSPPFKPSR LIRGEETQTR IPAAMHEEIL DLLRCFADVE VRHIYREGNS 180 VAHTLCRQAY VHPGLWTDCS TLPAAVWEKI DDDLRGVVHE RLCNKKKKSS A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881581.1 | 5e-36 | uncharacterized protein LOC112939071 | ||||
TrEMBL | A2Y397 | 1e-166 | A2Y397_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G12170.1 | 4e-78 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2550 | 7 | 13 |