PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA017917-PA | ||||||||
Common Name | OsI_20220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 594aa MW: 65547.7 Da PI: 8.1495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 56 | 102 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l BGIOSGA017917-PA 56 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 102 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 9.4e-19 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l BGIOSGA017917-PA 108 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 154 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.3 | 2.7e-16 | 160 | 203 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ BGIOSGA017917-PA 160 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 203 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.294 | 51 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 55 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 56 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.95E-16 | 57 | 112 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 58 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.02E-14 | 59 | 102 | No hit | No description |
PROSITE profile | PS51294 | 30.661 | 103 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-31 | 105 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 108 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-15 | 110 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 111 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 158 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 159 | 207 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.856 | 159 | 209 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.1E-15 | 160 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-11 | 162 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MPAVKVEEEE EEERNPVASS PSVSEGSAHA AALASPTAAD SIFGRRRKSG PVRRAKGGWT 60 PEEDEKLRKA VDIYNGKNWK KIAESFSDRT EVQCLHRWQK VLDPELIKGP WTQEEDDVII 120 NMVKKHGPKK WSVIARSLNG RIGKQCRERW HNHLDPQIRK EAWTVEEERV LARAHCMYGN 180 KWAEIAKLLP GRTDNSIKNH WNSSLRKKID DYNTRDILPV HPPVVGDGLK QLPKRPPADN 240 HFDLNKEPII CSRDRLGVVH SDPTSHQRAS NLKDFKGCAD YLSLGQPVTS CEASAADDSA 300 FDLATQGMRM DSVHDKGTGN NFVCGKVQGI NFLGDKGLKI NQISDKMGCS RQAKREGEAA 360 INGGGSSLQS EAHSVGSLCY QIPKMEDIAP AQSPVFTANY VPEHSRNVMH SPNGYTTPPT 420 HGKGSDQLSV ESILRSAAEK FHGTPSILRR RKRDKPTPAE DNDLKIGRLS SDDFHTPIGK 480 CTTDSPQSFK TAALLSLGPM DEQGSLDVSP PYRLRSKRLA VLKTVQNHLD FSSDEMSICD 540 TTMKSACGNS DCANASSGVS SIQGKKLDEH MIGLETLTMN FAHTTKLDAT QPNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-69 | 55 | 209 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-69 | 55 | 209 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 455 | RRRKRDKP |
2 | 449 | 454 | RRKRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54784 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115464296 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106756 | 0.0 | AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637435.1 | 0.0 | transcription factor MYB3R-2-like | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A2Y5F2 | 0.0 | A2Y5F2_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G20390.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-102 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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