PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 328aa MW: 34719.6 Da PI: 4.6471

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA017860-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	70	3.3e-22	125	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STT..EEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpk..vveitYegeHnhe 59 +dD++ WrKYGqKe+k+s++pr YYrC+++ gC+++k+v++s++ d+ v +itY geH+++ BGIOSGA017860-PA 125 MDDKFLWRKYGQKEIKNSKHPRFYYRCSYKddhGCTATKQVQQSETaddDTAspVYIITYFGEHTCR 191 58*************************99999***9986421133233789*****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	16.96	120	170	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-23	121	191	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-22	122	191	IPR003657	WRKY domain
SMART	SM00774	8.4E-33	125	192	IPR003657	WRKY domain
Pfam	PF03106	9.1E-24	126	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MALTMVSLAA IAGKPTAASA QLVAEGRESA ARLYALLVGS SALHGPVGLA EQILLCFDRA 60 LAKLHGVNLA GAEDDDDAAG NGNGRKRKPG RGRGLTAASA AASSKRMRVS NAGGNGARIE 120 RKATMDDKFL WRKYGQKEIK NSKHPRFYYR CSYKDDHGCT ATKQVQQSET ADDDTASPVY 180 IITYFGEHTC RHGDDAAAMV VDGGEEEDQL SPAQMVISFA SSNGGDASVS WPCSGDDAQN 240 NSETSHESSP PEAPAGEEER LRPCTAAGVS DEPIMESTPP APELLADLKP MDGCLLDGES 300 LFGMDELVYF HELSAALGLL DRDWGAPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-21	125	191	8	69	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144737	0.0	AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639266.1	0.0	probable WRKY transcription factor 38
TrEMBL	A0A0E0HG18	0.0	A0A0E0HG18_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PNZ8	0.0	A0A0E0PNZ8_ORYRU; Uncharacterized protein
TrEMBL	B9FJS3	0.0	B9FJS3_ORYSJ; Uncharacterized protein
TrEMBL	Q6IEM7	0.0	Q6IEM7_ORYSI; WRKY transcription factor 54
STRING	ORUFI05G21600.1	0.0	(Oryza rufipogon)
STRING	ONIVA05G21460.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4663	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	2e-20	WRKY DNA-binding protein 38

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]