PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016901-PA
Common NameOsI_16930
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 629aa    MW: 65353.2 Da    PI: 5.9403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016901-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1732.3e-533546113269
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a+k fs++sP+l+f++
  BGIOSGA016901-PA 354 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFAN 441
                       7899*************************************************.....6666777888888********************** PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +t  qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++ 
  BGIOSGA016901-PA 442 FTVTQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI- 533
                       *********999887799************************96544459*****************************************9. PP

              GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                         +l+++++ eL   + +E++aV+l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ + ++++
  BGIOSGA016901-PA 534 --NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSVYVFLN 611
                       ..999999999966557**********877776........5677************************************9887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.537326629IPR005202Transcription factor GRAS
PfamPF035147.9E-51354611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MRAAPFSADG NGAAELAGSI AALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHGSG AADSISTGVA AVSESSAAAA EATRWAAPGE HGGGGGGELP PIPGALDVGF  120
VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH  180
PGGVSSPAAL ASDLSSSGRR SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD  240
MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH  300
NQPQPPPPAP AQCLPFPTLH STVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA  360
KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL LLALADGHHA ATRLTSPLDV  420
ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL  480
AHRCGSGGVS LPMLKLTAFV SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP  540
MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL  600
NCLQSVYVFL NHLMLLALMR MLSVRSRGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-1235958526250Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.208260.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329859660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA2XWA30.0A2XWA3_ORYSI; Uncharacterized protein
STRINGONIVA06G04040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-47GRAS family protein