PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 360aa MW: 37291 Da PI: 9.3143

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016888-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.1	1.4e-39	107	183	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ l+ +keyhrrhkvCevh+kap v+v+g+eqrfCqqCsr h l efD++k+sCrrrLa+hnerrr+++ BGIOSGA016888-PA 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRLHVLAEFDDAKKSCRRRLAGHNERRRRSN 183 6*************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.9E-33	105	169	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.094	105	182	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-38	106	185	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-31	108	181	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEGNGCGGSG ATPRGVVGMH WAPVVTSPPS PQPPFLPPAP CRPDVQMQQQ GGLTCLKLGK 60 RPCFWGGDGA GQVAQGSGGG GGGGGGGSAD QGKRKEKAAT AVPVVPRCQV EGCDITLQGV 120 KEYHRRHKVC EVHAKAPRVV VHGTEQRFCQ QCSRLHVLAE FDDAKKSCRR RLAGHNERRR 180 RSNASEAMAR GSAHPHGMPV LGHGFPPYGL PTSSAGALSL LSSARATGPW LMPTPDISAR 240 SSAALDELIA ENRAALLSWQ FFSDRQPPPA GRPTGRSPGS ETAGGWHAHL QAPPPPPGAG 300 GQHEHQSGHV TLDLMQATTA AGGSGAPFRP VPARPAKEGG DAGCTSDAWT PSPMEGARVV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEGNGCGGSG ATPRGVVGMH WAPVVTSPPS PQPPFLPPAP CRPDVQMQQQ GGLTCLKLGK  60
RPCFWGGDGA GQVAQGSGGG GGGGGGGSAD QGKRKEKAAT AVPVVPRCQV EGCDITLQGV  120
KEYHRRHKVC EVHAKAPRVV VHGTEQRFCQ QCSRLHVLAE FDDAKKSCRR RLAGHNERRR  180
RSNASEAMAR GSAHPHGMPV LGHGFPPYGL PTSSAGALSL LSSARATGPW LMPTPDISAR  240
SSAALDELIA ENRAALLSWQ FFSDRQPPPA GRPTGRSPGS ETAGGWHAHL QAPPPPPGAG  300
GQHEHQSGHV TLDLMQATTA AGGSGAPFRP VPARPAKEGG DAGCTSDAWT PSPMEGARVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	108	181	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	87	SGGGGGGGGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.52683	0.0	stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32978772	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068749	0.0	AK068749.1 Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635344.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	0.0	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0E0H3Y5	0.0	A0A0E0H3Y5_ORYNI; Uncharacterized protein
STRING	ONIVA04G19190.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-34	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Xie K,Wu C,Xiong L Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiol., 2006. 142(1): p. 280-93 [PMID:16861571] Yang Z, et al. Comparative study of SBP-box gene family in Arabidopsis and rice. Gene, 2008. 407(1-2): p. 1-11 [PMID:17629421]