PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016852-PA

Common Name

H0501D11.4, HOX22, OsI_016250

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 262aa MW: 29096.3 Da PI: 4.828

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016852-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	60	113	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ BGIOSGA016852-PA 60 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 113 458************9899******************************9 PP
2	HD-ZIP_I/II	125.3	2.8e-40	58	151	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+ BGIOSGA016852-PA 58 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLH 150 69****************999****************************************************************9998 PP HD-ZIP_I/II 93 e 93 e BGIOSGA016852-PA 151 E 151 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.3E-18	49	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	54	115	IPR001356	Homeobox domain
SMART	SM00389	8.6E-20	57	119	IPR001356	Homeobox domain
CDD	cd00086	6.41E-18	59	116	No hit	No description
Pfam	PF00046	3.9E-17	60	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.4E-20	60	122	IPR009057	Homeodomain-like
PRINTS	PR00031	6.5E-7	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.5E-7	95	111	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-14	115	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDRGDHHHLQ QQHQFLMPPP APVVPPQLCM PAMMADEQYM DLGGGGAAAA PGRGGAGERK 60 RRFTEEQIRS LESMFHAHHA KLEPREKAEL ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD 120 YAALRSKYDA LHSRVESLKQ EKLALTVQLH ELRERLRERE ERSGNGGAAT TAASSSSCNG 180 SGSEEVDDDD DKRNAAAGCL DLEPPESCVL GGATCATPAD VSVESDQCDD QLDYDEGLFP 240 ESFCATPELW EPWPLVEWNA VA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.12134	0.0	callus\| leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32994386	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY224440	0.0	AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634133.1	0.0	homeobox-leucine zipper protein HOX22
Swissprot	Q01IK0	0.0	HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
Swissprot	Q7XUJ5	0.0	HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBL	A0A0D3FYH6	0.0	A0A0D3FYH6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZNQ2	0.0	A0A0D9ZNQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H3R1	0.0	A0A0E0H3R1_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PC66	0.0	A0A0E0PC66_ORYRU; Uncharacterized protein
TrEMBL	B8ASL8	0.0	B8ASL8_ORYSI; Uncharacterized protein
TrEMBL	B9FGE0	0.0	B9FGE0_ORYSJ; Uncharacterized protein
TrEMBL	I1PNG8	0.0	I1PNG8_ORYGL; Uncharacterized protein
STRING	OGLUM04G20240.1	0.0	(Oryza glumipatula)
STRING	ORUFI04G21910.1	0.0	(Oryza rufipogon)
STRING	ONIVA04G18550.1	0.0	(Oryza nivara)
STRING	ORGLA04G0173700.1	0.0	(Oryza glaberrima)
STRING	OBART04G20320.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4027	31	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-35	homeobox 7

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]