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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016426-PA | ||||||||
Common Name | OsI_15920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 22397.1 Da PI: 4.7475 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 4 | 20 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i+e +++YIk+Lq BGIOSGA016426-PA 4 DKATIVEATINYIKNLQ 20 8***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-5 | 3 | 33 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDTDKATIVE ATINYIKNLQ DKIHKMEMLK VEREHAIALA TAATATAAAS ADTALQAPPP 60 SEEENEEHDS GVAAATREMA LADMVHAWEQ QQEAAATGGS HGGHAVPPPP PAASLQTWTG 120 PNMTASLTGD DGFITLSLPH QGGQKNLVAG AVSVLERHHI DVVTATVSAS EQGDNLISLH 180 CHLSPGSSSS QNLTPLDKFK LAMSELMLWV ISV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54995 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115458417 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107268 | 0.0 | AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635110.1 | 1e-151 | transcription factor bHLH95 | ||||
TrEMBL | B8ATS9 | 1e-153 | B8ATS9_ORYSI; Uncharacterized protein | ||||
STRING | OS04T0429300-01 | 1e-150 | (Oryza sativa) | ||||
STRING | ONIVA04G10990.1 | 1e-149 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |