PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016336-PA
Common NameOsI_15773
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 131aa    MW: 15063.1 Da    PI: 8.3251
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016336-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26045.81.8e-1445974597
            DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                      + ++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la  
  BGIOSGA016336-PA 45 IRQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 97
                      5689999******************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.9E-124796IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS  60
LVYEANDRMR DPVYDCVRAI SFLQNQVSQL QMQLAIGQGE NLCIQMQHRR FAAQYRVNRP  120
NLAISQDPLG S
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551101e-101CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624534.12e-29LOB domain-containing protein 12
RefseqXP_015638859.12e-29LOB domain-containing protein 12
RefseqXP_025806795.12e-29LOB domain-containing protein 12-like
SwissprotQ8LBW36e-25LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA2XT366e-92A2XT36_ORYSI; Uncharacterized protein
STRINGOGLUM04G11190.17e-58(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3077722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-27LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]