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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016274-PA | ||||||||
Common Name | OsI_15659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CAMTA | ||||||||
Protein Properties | Length: 915aa MW: 102724 Da PI: 6.0964 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.2 | 2.1e-55 | 30 | 146 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np BGIOSGA016274-PA 30 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPC 122 67779**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrrc+w+Le ++e+ivlv+y+ev BGIOSGA016274-PA 123 FQRRCFWMLEPAYEHIVLVQYREV 146 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.349 | 26 | 152 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.0E-70 | 29 | 147 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.6E-47 | 32 | 145 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 8.26E-5 | 419 | 466 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 9.7E-16 | 558 | 654 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.769 | 560 | 652 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.54E-15 | 560 | 654 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.34E-9 | 565 | 652 | No hit | No description |
Pfam | PF12796 | 3.6E-7 | 576 | 654 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.4E-4 | 593 | 622 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.927 | 593 | 625 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 632 | 661 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 713 | 735 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 714 | 743 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.27E-6 | 769 | 819 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.95 | 772 | 801 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 19 | 773 | 793 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.02 | 774 | 792 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 794 | 816 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 795 | 823 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.3E-5 | 796 | 816 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 915 aa Download sequence Send to blast |
MSLSKWSSLV VSLVDSWLDR PSCFDINVLH KEARSRWLKP SEVYYILQNH ERFPITPEPP 60 KKPPSGSLFL YNRRVNRYFR RDGHAWRRKK DGRTVGEAHE RLKVGNVDAL SCYYAHGEQN 120 PCFQRRCFWM LEPAYEHIVL VQYREVGAAE GRYNSASLLN GPTDSLSVLS YPNATYGNQY 180 LGSTSGVSDG SESLHSNLSS VTEVSSYSAN KDNGILQSIQ ELSQSTIMGA PALGQSSLEQ 240 SIEVRWVDNS NSTNKSGLNR ALKQIVEQLS LGDDEDDDYI HQAQPFDFIT NIEAPDRQRD 300 ASRNVSEYQP PGSLYNSDMQ QISAAKRFLL ETEDSIDSPS YNYVPREEGN NGTNTLSVHD 360 YSLQSSLNPD WKKTAPLTLQ SNLYGSEIPS LLLDHGQFES LSSGENTRLI LGQNPRFSIR 420 EVSPEWTYCY EITKVIITGD FLCDPSSSCW AVMFGDSEVP AEIVQAAKSC YFLAKFVRML 480 LCENGSHANS NGDPQSVQCP KLKMNDEHWQ RLIDELKGGC ENPLNVSDWI MEELLKSKLQ 540 QWLSVKLQGY DGIACSLSKH EQGIIHLISA LGYEWALSSI LSADVGINFR DTNGWTALHW 600 AAYFGREKMV AALLAAGASA PAVTDPTAQD PVGKTAAFLA SERGHLGLAA YLSEVSLTSY 660 LASLTIQESD TSKGSAAAEA ERAVESISQR NAQLHGGTED ELSLKDSLAA VRNAAQAAAR 720 IQNAFRAFSF RKRQQKTARL KDEYGMTQED IDELAAASRS YYQSLLPNGQ FYDKAAVSIQ 780 KKFKGWKGRR HFLNMRRNAV KIQAHVRGHQ VRKKYKTFVS TVSVLEKVIL RWRRKGHGLR 840 GFRAEQTAMA EAEEDDEDDD DDDFNDDEAV KVFRRQKVDE SVKEAMSRVL SMVDSPEARM 900 QYRRMLEEFR QATAE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11702 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115458059 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122001 | 0.0 | AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635911.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 1e-137 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | B8AT75 | 0.0 | B8AT75_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G11670.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-122 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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