PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015307-PA
Common NameOsI_15430
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 457aa    MW: 49457.2 Da    PI: 10.0272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015307-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-1450147499
                       E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                       vl+ps+  k   +++  + a++      gg  ++  t ++ ++ g+ W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++ g   ++
  BGIOSGA015307-PA  50 VLVPSSFRK---MRICDELAAQLgvgvgGGGAPRAATARVASPLGKAWDVGV-VRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGGGgGGG 138
                       555555444...568888887779999955566888****************.688888899************************9887999 PP

                       ..EEEEE-S CS
                B3  91 elvvkvfrk 99 
                        l v +f++
  BGIOSGA015307-PA 139 VLAVEAFDT 147
                       888888876 PP
2B346.94.8e-151832621496
                       T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       + +++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +  + +g+  gD+v+F+++g+  f  +++v
  BGIOSGA015307-PA 183 DKMRIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQLLSFHGISRGDVVIFRYEGNLVF--KISV 262
                       5699**********555567889999************..*******************************9986666..5555 PP
3B378.57.2e-25350444184
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfv 80 
                       ++k++++++vl++++l+l ++f+e++g+ +e+s+tl++ d+++            rsWev+   r+++++ y+l++GW++F+++ng+++gD++
  BGIOSGA015307-PA 350 WIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMVDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVC 440
                       789*************************************99999*****************..9999999********************** PP

                       EEEE CS
                B3  81 vFkl 84 
                       vF++
  BGIOSGA015307-PA 441 VFTV 444
                       **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.01247148IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-1248148IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-949131No hitNo description
Gene3DG3DSA:2.40.330.101.0E-1149150IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1149146IPR003340B3 DNA binding domain
PROSITE profilePS508639.78491148IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-18166267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-19167266IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.07170266IPR003340B3 DNA binding domain
CDDcd100171.63E-16171263No hitNo description
SMARTSM010198.4E-14173266IPR003340B3 DNA binding domain
PfamPF023628.5E-13183258IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-14346455IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-17347455IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.928350457IPR003340B3 DNA binding domain
PfamPF023621.5E-14350445IPR003340B3 DNA binding domain
SMARTSM010197.0E-5351455IPR003340B3 DNA binding domain
CDDcd100171.27E-7355443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MITPDSSQHH RPAEKAPRVV VSPAAAMGSR GDHGGGGGGR GAARATQLKV LVPSSFRKMR  60
ICDELAAQLG VGVGGGGAPR AATARVASPL GKAWDVGVVR DGDGRAFLGR GWAEFAAAHG  120
LGVGWFVVLR HGGGGGGGVL AVEAFDTTCC LRVFGAPPAE AGRATDTSRK PQFLTVLLPG  180
IMDKMRIPDK FVRDYITGEN LNSNMAIILS PLGKSWRVEL DKDQSGVFLG GGWLQLLSFH  240
GISRGDVVIF RYEGNLVFKI SVFGPNGRQK DFKAKGISIH QGTGEQQEAP SFSRRKCNNK  300
KKSRFGEDDG NQQEMPCSRK GSGNKGRTSD RETKRMRKTR SVYEIGPRSW IKKEINEYVL  360
ERCILSLART FCESIGLAEE SSITLMMVDT TSTQGDQGGS SSSSRSWEVT GRRYKDACYL  420
LGAGWRRFCE DNGVRSGDVC VFTVLDTTLW RVDIERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-168CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-168CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLB8ASH00.0B8ASH0_ORYSI; Uncharacterized protein
STRINGORUFI04G09410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-17B3 family protein