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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015142-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 76aa MW: 8473.17 Da PI: 10.6608 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 131.8 | 1.8e-41 | 9 | 76 | 4 | 70 |
S1FA 4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++e+ kGlnPG ivllvv++ll++f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe BGIOSGA015142-PA 9 IIEEVnKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 76 456777*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 4.0E-9 | 8 | 76 | No hit | No description |
Pfam | PF04689 | 2.6E-39 | 12 | 76 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MADQSNNMII EEVNKGLNPG TIVLLVVATL LILFFVGNYA LYMYAQKTLP PRKKKPVSKK 60 KLKREKLKQG VSAPGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46479 | 1e-128 | callus| flower| leaf| panicle |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289133 | 1e-126 | AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence. | |||
GenBank | BT129157 | 1e-126 | BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence. | |||
GenBank | BT130526 | 1e-126 | BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633416.1 | 4e-48 | DNA-binding protein S1FA1 | ||||
Swissprot | P42553 | 3e-49 | S1FA1_ORYSJ; DNA-binding protein S1FA1 | ||||
TrEMBL | A0A0E0P8S5 | 5e-47 | A0A0E0P8S5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G12850.1 | 9e-48 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |