PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015085-PA | ||||||||
Common Name | OsI_15943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 165aa MW: 16768.1 Da PI: 10.9078 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 36.7 | 5.8e-12 | 91 | 156 | 314 | 374 |
GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374 +W++++e aG+ v+ls+++++qaklll++ + + g+rv e +g + l W+d +L +++ Wr BGIOSGA015085-PA 91 NWKAAMEGAGLDGVKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATLWR 156 7***************************9977422455***9998877668**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.0E-9 | 91 | 156 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MNLTLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA 60 EEFDHENGMA ATSSDGGGGG GGGDHAAASW NWKAAMEGAG LDGVKLSSRT VSQAKLLLKM 120 KSGCGGGGFR VVEGDGGMAM SLAWRDMALA TATLWRRRRR RRRCR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 162 | RRRRRRRR |
2 | 156 | 162 | RRRRRRR |
3 | 157 | 164 | RRRRRRCR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297602755 | 1e-136 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634839.1 | 1e-53 | protein MONOCULM 1 | ||||
TrEMBL | A2XTL1 | 1e-107 | A2XTL1_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM04G12700.1 | 4e-42 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11649 | 30 | 38 |