PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014498-PA | ||||||||
Common Name | OsI_17101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 42836.7 Da PI: 7.3194 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94 | 1e-29 | 87 | 175 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + BGIOSGA014498-PA 87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 175 89***************************955556889************************************************844 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-41 | 78 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-29 | 84 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-24 | 85 | 172 | No hit | No description |
SMART | SM01019 | 8.6E-21 | 87 | 192 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-27 | 87 | 190 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.733 | 87 | 192 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS 60 SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN 120 EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAQAT 180 RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG 240 FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP 300 MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS 360 LELPPHMPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-61 | 82 | 191 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-61 | 82 | 191 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.73736 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297723390 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634107.1 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein Os04g0581400-like | ||||
Swissprot | Q6EU30 | 1e-122 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A0E0H533 | 0.0 | A0A0E0H533_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XWR8 | 0.0 | A2XWR8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G22030.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-62 | B3 family protein |
Publications ? help Back to Top | |||
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