PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 370aa MW: 39639.4 Da PI: 4.7292

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014440-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G +W++ ++ g+ R++k+c++rw +yl BGIOSGA014440-PA 16 KGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799***************************99**********97 PP
2	Myb_DNA-binding	53.1	7.6e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l BGIOSGA014440-PA 69 RGNFTAEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.03	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.5E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-24	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.58E-10	18	63	No hit	No description
PROSITE profile	PS51294	24.662	64	118	IPR017930	Myb domain
SMART	SM00717	6.3E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-15	69	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-26	71	117	IPR009057	Homeodomain-like
CDD	cd00167	5.00E-11	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP 120 EQKKGGGKSK KKTTCTDVLV PSPSPSSSTT TTTNCSSGDS AGEQSNTSKE EEEETDKIEI 180 PMLELDPCCF DFDMLVDPVV PDTYCPAVSA SASASAPTSP CSSTSPSCAR AGVDPLLDLP 240 EIVDLGPELW SIMDGGAGDG CTEAPPPAWS NAAAAAAANA TVATTTSLEE EGKEWWLEDL 300 EKELGLWGPT DDYHCHPGPQ GQPGRAGPPP SAVVEDPVSC YFQAGPTAAA TWQGHEPSAV 360 ITSNPMDYYV

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP  120
EQKKGGGKSK KKTTCTDVLV PSPSPSSSTT TTTNCSSGDS AGEQSNTSKE EEEETDKIEI  180
PMLELDPCCF DFDMLVDPVV PDTYCPAVSA SASASAPTSP CSSTSPSCAR AGVDPLLDLP  240
EIVDLGPELW SIMDGGAGDG CTEAPPPAWS NAAAAAAANA TVATTTSLEE EGKEWWLEDL  300
EKELGLWGPT DDYHCHPGPQ GQPGRAGPPP SAVVEDPVSC YFQAGPTAAA TWQGHEPSAV  360
ITSNPMDYYV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-28	14	118	25	128	MYB TRANSFORMING PROTEIN
1mse_C	3e-28	14	118	2	105	C-Myb DNA-Binding Domain
1msf_C	3e-28	14	118	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.31381	0.0	panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37988623	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00249	DAP	Transfer from AT1G79180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111960	0.0	AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635813.1	0.0	myb-related protein Zm1
Swissprot	P20024	1e-103	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A2XX21	0.0	A2XX21_ORYSI; Uncharacterized protein
STRING	ORGLA04G0202400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	4e-69	myb domain protein 63

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]