PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014412-PA
Common NameOsI_17269
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 277aa    MW: 32228 Da    PI: 7.4606
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014412-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89.6e-2621106186
          trihelix   1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W  qe+++Li+ar eme+++ ++    +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  BGIOSGA014412-PA  21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106
                       7********************975223369*************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00471884IPR001005SANT/Myb domain
CDDcd122031.62E-162089No hitNo description
PfamPF138372.9E-2221107No hitNo description
PROSITE profilePS500907.2822282IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA  60
RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL  120
LESESGPSVK KKLKRPSGDL SSEDSDDEED GGGDSGDEKP IRSRKRKIAD KRQQSQRMAE  180
KSRTSISSTH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE  240
HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.279460.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329909290.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880753.10.0uncharacterized protein LOC4336887
TrEMBLA2XX670.0A2XX67_ORYSI; Uncharacterized protein
TrEMBLQ01HT10.0Q01HT1_ORYSA; B0403H10-OSIGBa0105A11.17 protein
STRINGORUFI04G25870.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-27Trihelix family protein