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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014220-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19678.8 Da PI: 10.801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ t+ Aa+a++ a +l+g BGIOSGA014220-PA 53 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 102 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 52 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.589 | 53 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 53 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-37 | 53 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-10 | 53 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-12 | 54 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-25 | 54 | 111 | No hit | No description |
PRINTS | PR00367 | 4.2E-12 | 92 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MQGEYHRSSS EDSAASAAAA AAAAAAAMAP LAAAAAAAAA AVLPLQQQQP RRQYRGVRMR 60 KWGKWVAEIR EPHKRTRIWL GSYATPVAAA RAYDTAVFYL RGRSARLNFP EEISSLASLS 120 EGGGASEPRE PDGGTLSAAS IRKKAIEVGS RVDAXXXXXX XXXXXXXXXX XXVAMPWGFL 180 SLGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 52 | 115 | 4 | 68 | ATERF1 |
3gcc_A | 1e-15 | 52 | 115 | 4 | 68 | ATERF1 |
5wx9_A | 3e-15 | 53 | 114 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22629 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117234960 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061095 | 0.0 | AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence. | |||
GenBank | AK099333 | 0.0 | AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence. | |||
GenBank | AL606635 | 0.0 | AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence. | |||
GenBank | AL732335 | 0.0 | AL732335.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637236.1 | 4e-70 | ethylene-responsive transcription factor ERF008 | ||||
Swissprot | O22174 | 5e-42 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A0D9ZRM3 | 8e-69 | A0A0D9ZRM3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H6N8 | 8e-69 | A0A0E0H6N8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XYA3 | 8e-69 | A2XYA3_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q25A30 | 8e-69 | Q25A30_ORYSA; H0721B11.1 protein | ||||
TrEMBL | Q7XTV6 | 8e-69 | Q7XTV6_ORYSJ; OSJNBa0010D21.10 protein | ||||
STRING | OGLUM04G27370.1 | 1e-69 | (Oryza glumipatula) | ||||
STRING | OS04T0648900-01 | 1e-69 | (Oryza sativa) | ||||
STRING | ONIVA04G25910.1 | 1e-69 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 9e-40 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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