PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014175-PA
Common NameOsI_17774
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 383aa    MW: 42299.1 Da    PI: 7.5663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014175-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.45.1e-1252106258
                       --SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy Wr  Gq + +g   p   s Y+C++a+C v+k v  +a     ve+ Y+g+Hnh
  BGIOSGA014175-PA  52 DDGYYWRMTGQSTTQGESSPtiLSHYQCAQANCVVQKTVAYTA----DVETFYRGRHNH 106
                       8**************987773369***************9988....5899******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.9E-451108IPR003657WRKY domain
SuperFamilySSF1182905.1E-1151106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-1051106IPR003657WRKY domain
PfamPF031067.6E-1052106IPR003657WRKY domain
PROSITE profilePS5081110.31552106IPR003657WRKY domain
PROSITE profilePS508089.308179244IPR003656Zinc finger, BED-type
SMARTSM006142.1E-14179230IPR003656Zinc finger, BED-type
PfamPF028924.7E-6182226IPR003656Zinc finger, BED-type
SuperFamilySSF576671.31E-7182230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MADQGFRPFS ALMSAPSTAQ QHVGSSFSTA VVQVAAAQQS HTDHGNICLA DDDGYYWRMT  60
GQSTTQGESS PTILSHYQCA QANCVVQKTV AYTADVETFY RGRHNHLRQS DRLEPMSQVG  120
VLVEASDAAG AAAGPSVPET ENGDDQSSGS SDRNEDDAGD VEMDEDAAAG DPNAMQRRKL  180
KSKVWKEFKL VFKDGKLHTA ICNHCKLRLV AETRNGTSHL RRHLKICPEK AGTSRVQKKR  240
RSSTSQSQPD LPVSENLENG QENPSQNLEN GQENPLEEFM RATVLKLCPF PAMYRASFAS  300
FLAGRNPAPN MVPQTTVEDK FISVYEKEKL KLKEKIIATP GGVFLSVNKW YSGSYETGIN  360
SYGRNRDHNR SFTKLVCMHT RTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649908.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649909.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649910.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649911.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649912.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649913.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLB8AVX40.0B8AVX4_ORYSI; Uncharacterized protein
STRINGORUFI08G06360.11e-112(Oryza rufipogon)
STRINGORGLA08G0050000.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-08WRKY family protein