PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014161-PA
Common NameOsI_17799
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WOX
Protein Properties Length: 285aa    MW: 30193.5 Da    PI: 8.217
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014161-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-193191357
                      --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+t+t+eq+++L el+++   r p+ e+++++A+ l    +++ ++V++WFqN++a+e++
  BGIOSGA014161-PA 31 TRWTPTTEQIKILRELYYScgIRSPNSEQIQRIAAMLrqygRIEGKNVFYWFQNHKARERQ 91
                      7*****************7668*************************************97 PP
2Wus_type_Homeobox114.64.7e-373093365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRWtPt+eQikiL+ely+ +G+r+Pn+e+iqri+a+L++yG+ie+kNVfyWFQN+kaRerqk+
   BGIOSGA014161-PA 30 GTRWTPTTEQIKILRELYYsCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKK 93
                       69***************9978*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-122495IPR009057Homeodomain-like
PROSITE profilePS5007110.3982692IPR001356Homeobox domain
SMARTSM003897.3E-62896IPR001356Homeobox domain
PfamPF000461.2E-163191IPR001356Homeobox domain
CDDcd000868.91E-73193No hitNo description
Gene3DG3DSA:1.10.10.601.5E-73291IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQQQQRQQVG GGGGEEVAGR GGVPVCRPSG TRWTPTTEQI KILRELYYSC GIRSPNSEQI  60
QRIAAMLRQY GRIEGKNVFY WFQNHKARER QKKRLTTLDV TTTTAAAADA DASHLAVLSL  120
SPTAAGATAP SFPGFYVGNG GAVQTDQANV VNWDCTAMAA EKTFLQDYMG VSGGGGAAAA  180
APTPWAMTTT REPETLPLFP VGGGGGDGAH RHAGHGGFPS NFQRWGSAAA TTNTITVQQH  240
LQQHNFYSSS SSQLHSQDGP AAGTSLELTL SSYYCSCSPY PAGSM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaf primordia. Expressed in branch an floral meristems. Transiently expressed in the shoot apex. {ECO:0000269|PubMed:16284419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188940.0AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635371.11e-169WUSCHEL-related homeobox 1B
SwissprotQ7XM131e-170WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLB8AVY70.0B8AVY7_ORYSI; Uncharacterized protein
TrEMBLQ01K300.0Q01K30_ORYSA; OSIGBa0099L20.6 protein
STRINGONIVA04G27090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-34WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]