PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA014134-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19317.8 Da PI: 9.6932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 7 | 57 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + r+r++lg++++ae Aa+a++ a+++l+g BGIOSGA014134-PA 7 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 57 68********.**********843...6*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-14 | 7 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.25E-20 | 7 | 65 | No hit | No description |
PROSITE profile | PS51032 | 24.039 | 8 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-22 | 8 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-31 | 8 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 8 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MCEAAAPRYR GVRKRPWGRF AAEIRDPAKR ARVWLGTYDS AEAAARAYDV AARNLRGPLA 60 RTNFPLVSSL PLPSPHYHLP GKAAAAAPPV AGPACSASST VESSSGPRGP RPAATAAAVP 120 RRRVPRPAPP APDAGCHSDC ASSASVVDDA DDASTVRSRV AAFDLNLPPP LDRDHVDLCT 180 DLRL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 4 | 66 | 1 | 64 | ATERF1 |
3gcc_A | 1e-20 | 4 | 66 | 1 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.19362 | 0.0 | callus| flower| leaf| root| seed| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606619 | 0.0 | AL606619.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence. | |||
GenBank | AL732340 | 0.0 | AL732340.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence. | |||
GenBank | AL732346 | 0.0 | AL732346.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634065.1 | 1e-124 | ethylene-responsive transcription factor 7 | ||||
Swissprot | O80339 | 4e-32 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0H774 | 1e-123 | A0A0E0H774_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PFF6 | 1e-123 | A0A0E0PFF6_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q259P7 | 1e-123 | Q259P7_ORYSA; B0811B10.20 protein | ||||
TrEMBL | Q7XR67 | 1e-123 | Q7XR67_ORYSJ; OSJNBa0043A12.18 protein | ||||
STRING | ORUFI04G30650.1 | 1e-123 | (Oryza rufipogon) | ||||
STRING | OS04T0669200-01 | 1e-123 | (Oryza sativa) | ||||
STRING | ONIVA04G27460.1 | 1e-123 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-21 | ethylene response factor 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|