PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014093-PA
Common NameOsI_17917
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 530aa    MW: 58748.6 Da    PI: 7.9187
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014093-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18370460390
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ +++ ++
  BGIOSGA014093-PA 370 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKSSE-SE 460
                       89************************888999********7778*******9989999999**99.9******************95544.32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.45E-21367463No hitNo description
SuperFamilySSF1019366.54E-19367464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-24367463IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.178368470IPR003340B3 DNA binding domain
SMARTSM010193.3E-9368469IPR003340B3 DNA binding domain
PfamPF023621.3E-14370460IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MADARGSSSS SGDGGGGEGN GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP  60
AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN  120
NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH  180
PAAIEDHHAP LFHSNNHDID PEFLGNRHLH GVDIAGAPPA KATSPATAGG LLTNTAPATV  240
SQIHARCRRR QIYRCCGLLP RAPPPSDPCA FARAAITAAR SARGLLSHLY GGLVFWLVGK  300
RKLGEKRERK RKVVAEMDPP IVFRRSDMES EKNDDNPDQT PVSEPPSMNQ NGENLIIRFN  360
CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY  420
RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESE KFVSSVPFTS TTYGESDGED  480
YNGDRSGPGA GEVADEDFRK PEFGWYCCAK INRKESEIRE QVSKEKVNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A7e-343594554100B3 domain-containing transcription factor LEC2
6j9c_D7e-343594554100B3 domain-containing transcription factor LEC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.534771e-164callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329828971e-164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323500.0AL732350.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.11e-121putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC41e-122Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA2XYY40.0A2XYY4_ORYSI; Uncharacterized protein
TrEMBLQ259I60.0Q259I6_ORYSA; H0101F08.7 protein
STRINGORGLA04G0258600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2156545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.15e-33B3 family protein