![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
BGIOSGA014034-PA |
Common Name | OsI_18042 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
NAC |
Protein Properties |
Length: 290aa MW: 32265.2 Da PI: 6.5006 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
BGIOSGA014034-PA | genome | RIS | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Osi&pid=BGIOSGA014034-PA) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 151.1 | 5.5e-47 | 8 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatgk 88
+pGfrFhPt+eelv +yL++kv g++ + +i+evd++++ePwdL +++++++ +yfFs +d+ky+ tg+r+nrat++g+Wkatg+
BGIOSGA014034-PA 8 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLNSIEPWDLL-QAQQHDQeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATGR 97
79************************666..8**************7.34444441366**********98888899**************** PP
NAM 89 dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
dk+vls+ + +g++ktLvfy+grap+g ktdW++heyrl
BGIOSGA014034-PA 98 DKPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 142
******8551..245556***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MEEWCCVAPG FRFHPTEEEL VGYYLARKVV GQQDDGIIQE VDLNSIEPWD LLQAQQHDQE 60 YYCYFFSYKD RKYPSARGTG TRTNRATAAG FWKATGRDKP VLSSSRSSSS PAVIGMRKTL 120 VFYRGRAPNG CKTDWIIHEY RLVAHHQQPD GSCWVVCRAF HKPTTTTTLQ HQLHLHRPPP 180 LLHHPGYYDD QYLCPPPAAA GGGGLLCSPA LDMELEDEED ESKMMILSND NIPLVVSPTA 240 VHTQGTGGDI INDATTAPAA AAAAADHRRH PELLAAGPID TLLHHHHFTC
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Uniprot | TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Present in developing xylems (PubMed:16103214, PubMed:17565617). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL732342 | 0.0 | AL732342.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence. |
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |