PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014023-PA
Common NameOsI_18065
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 400aa    MW: 44125.7 Da    PI: 4.3492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014023-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.9e-5161341129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++
  BGIOSGA014023-PA   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRP 97 
                       79****************************.89**************95357788999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  BGIOSGA014023-PA  98 VIY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                       ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-603156IPR003441NAC domain
PROSITE profilePS5100556.4886156IPR003441NAC domain
PfamPF023651.7E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK  60
DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDKELSA SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN  180
GELSSFAFSV PPCALESSNG RLNTAGQQLA VSDNIGSSLD HCSETNDKIA VGGCGTTSPS  240
VPFDTIHTQQ LAEIISCFST DLLNSVSRDG SLPDSTADYD NDNEVSSDDG EAIFNELDEL  300
DSQSDESISN HCNSCGEDLI PPTLEVLKTE QYLELNDLSF SLADDPDPCN LLLTTNLSDQ  360
NHPELETRFE QGSLVDICNT TNATISNAAC SASTVGDHVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-53215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.932570.0callus| flower| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329781710.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681530.0AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448842.10.0NAC transcription factor 32
RefseqXP_021318096.10.0NAC transcription factor 32
RefseqXP_021318097.10.0NAC transcription factor 32
RefseqXP_021318098.10.0NAC transcription factor 32
TrEMBLA2XZC10.0A2XZC1_ORYSI; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-83NAC domain containing protein 82