PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 293aa MW: 32195.8 Da PI: 5.6473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013533-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.4e-08	126	170	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++ K +K +i++ A YI++L BGIOSGA013533-PA 126 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 170 889********************8.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.738	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-12	121	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.68E-7	125	171	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-9	126	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-5	126	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-4	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MESYYGAFHA DEAAFFFPHH VPASPELPFG LIASPEPEQA AAEARQSAFQ EYGGAVHAGA 60 PAAAGAVTTG GTNIHRRVMD VLGRMGGGGG GGEKGEGEEM EEEEEVPQRR RRGQGADVES 120 SRGFRHMMRE RQRREKLSQS YADLYAMVSS RSKGDKNSIV QSAAIYIHEL KVARDQLQRR 180 NEELKAQIMG HDEQQPCVTV QFEVDEPSSS IDSMIAALRR LKGMSVKARG IRSSMSGNRL 240 WTEMNVETTI AACEVEKAVE EALKEVERNQ PDSDAPFPGS KGWTQTSHVQ NVF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.59419	0.0	callus\| leaf\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32981757	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071734	0.0	AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631231.1	1e-177	transcription factor BHLH148
Swissprot	Q75KV9	1e-178	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	B8AJT6	0.0	B8AJT6_ORYSI; Uncharacterized protein
STRING	ONIVA10G02990.3	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	6e-20	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]