PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013197-PA
Common NameOsI_12756
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 469aa    MW: 49451.2 Da    PI: 6.6271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013197-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.8e-17303349455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  BGIOSGA013197-PA 303 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 349
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-21297361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-17302353No hitNo description
PfamPF000103.3E-14303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-21303357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAAVQ  60
EDEAGLWFPF ALADSLEKDI FSDLFYEAPV AATAAAAPAG PGAGADGEGK TCKGDAAMAE  120
EERGGPGAAQ QTMSLADGGD NAGDLSELVR ARRSSGGAVR RKAEAGGGGG GASSSMLSAI  180
GSSICGSNQV QVQQRTASEP GRRGAPPSAV GSANAIPCGG RDHGHGHEAT TVASSSGRSN  240
CCFGTNTTTE PTSTSNRSSK RKRLDTTEDS ESPSEDAESE SAALARKPPA KMTTARRSRA  300
AEVHNLSERR RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQMMWMGSG  360
MAPPVMFPGV HQYLPRMGVG MGAAAAAMPR MPFMAAPQPV VPTPPVNHLA HGSPGYRGHM  420
PAAAAAAVGL AEPYAHYLGV NHLQPAADPG SGMGSFYFYF YFYFYFSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.192290.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329705230.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4878300.0AJ487830.1 Oryza sativa mRNA for BP-5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880141.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA2XJY80.0A2XJY8_ORYSI; Uncharacterized protein
STRINGOGLUM03G27730.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3