PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 380aa MW: 42571.6 Da PI: 7.4688

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013145-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	9.9e-16	42	123	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++p +fa++++g s ++ l+++s+++W++ + +++ + vl+ GWkeFv+ ng++egD ++ +++g s+f v +f+ BGIOSGA013145-PA 42 ESMTVPARFANNFNGH--ISEEVNLRSPSSETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLVRYSGVsSSF--DVLIFDP 123 4599****888666..6779***********..5555445*************************987887..8888875 PP
2	B3	38.4	2.2e-12	262	342	5	85
-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +s+v +s +++ ++ +fa ++ g ++ + +++le ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+ BGIOSGA013145-PA 262 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 342 4445555445599999******76663.3..6999998999***9999999986.77*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-19	27	126	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.225	29	124	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.32E-19	30	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.47E-16	30	122	No hit	No description
SMART	SM01019	9.3E-4	32	124	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-12	42	122	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-16	252	342	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-16	252	369	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.45E-12	256	341	No hit	No description
SMART	SM01019	0.006	258	362	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.221	258	372	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-10	270	342	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE 60 EVNLRSPSSE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLVRYS GVSSSFDVLI 120 FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS 180 CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLRKED 240 REEISRVPVP VQPGNPVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR 300 GGEWHVLFVH RQNTRGFYGA GWRQFAGDNR LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR 360 RPTMTVHVLR RVRGRFVLLR

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE  60
EVNLRSPSSE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLVRYS GVSSSFDVLI  120
FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS  180
CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLRKED  240
REEISRVPVP VQPGNPVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR  300
GGEWHVLFVH RQNTRGFYGA GWRQFAGDNR LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR  360
RPTMTVHVLR RVRGRFVLLR

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32993869	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108660	0.0	AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628568.1	0.0	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	0.0	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	B8AML5	0.0	B8AML5_ORYSI; Uncharacterized protein
STRING	ORGLA03G0245100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	8e-26	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]