PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013137-PA | ||||||||
Common Name | OsI_12639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 12874.8 Da PI: 9.3234 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61 | 2e-19 | 32 | 111 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ s +++++ +++p+kf++++ggk s+t+ le+++g+++ vk+ +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f BGIOSGA013137-PA 32 QM--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIKNSRF 111 45..5556665.***********999..888****************..********************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-19 | 23 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-19 | 25 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.182 | 26 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.90E-16 | 27 | 111 | No hit | No description |
SMART | SM01019 | 3.3E-5 | 29 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-17 | 33 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE 60 LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIKNSR F |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53859 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985660 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100451 | 0.0 | AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630232.2 | 1e-75 | LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like | ||||
Swissprot | Q851W4 | 2e-76 | Y3205_ORYSJ; B3 domain-containing protein Os03g0620500 | ||||
TrEMBL | B8AMK6 | 1e-78 | B8AMK6_ORYSI; Uncharacterized protein | ||||
TrEMBL | C7J026 | 1e-78 | C7J026_ORYSJ; Os03g0620500 protein | ||||
TrEMBL | I1PDJ5 | 2e-74 | I1PDJ5_ORYGL; Uncharacterized protein | ||||
STRING | OS03T0620500-01 | 2e-79 | (Oryza sativa) | ||||
STRING | ORGLA03G0244100.1 | 4e-75 | (Oryza glaberrima) | ||||
STRING | OBART03G26260.1 | 9e-75 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-11 | B3 family protein |
Publications ? help Back to Top | |||
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