PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013074-PA
Common NameOsI_12502
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 705aa    MW: 80561 Da    PI: 6.3847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013074-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.25.8e-1033256971374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+avs ++++la+ +L+ ++++asp+gd  qRla +++  L  rl++++s++y+++ +++ +   +++ l+++++   ++P+l+ 
  BGIOSGA013074-PA 325 LRTLLINCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRA 414
                       6789*********************************************************999998887...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       sh   N++I++  +g+ +vHiiDf+i  G+QWp+L+++La+ ++gpp+lRiTg++ pesg     + +++g rLa++A+++++pfe++ + ++
  BGIOSGA013074-PA 415 SHYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSN 507
                       ***********************************************************999999************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e+l++e+++++++E+l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v    + +++ + Fl+rf e +++y +lfd+l++++pr
  BGIOSGA013074-PA 508 KWEALSPEDFNIEKDEVLIVNCIYRMKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPR 600
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++e+r+ +Er + +    nv+aceg er+er e+++kW+ r  +aG+ ++pl+  ++ + + ++rk + + + v+ee+++lvlgWk+r L++ 
  BGIOSGA013074-PA 601 DNETRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRILYAS 693
                       ***********999999**************************************************9888********************** PP

              GRAS 371 SaWr 374
                       S W+
  BGIOSGA013074-PA 694 STWQ 697
                       ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.493299677IPR005202Transcription factor GRAS
PfamPF035142.0E-100325697IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MGSDDNKRFD DFHVITNGPG SDAYSNEESI NLDSYIAQST SFCSKIYNPQ LYVEKGNGTT  60
DWCQTSGGDY PEKSSINSDI TLSYIDKILM QEDIDDRGNE DTALQAMEEP FYELLGEKYP  120
AFPQQQPLCV CDHLQNLSAN TDKSNGHACN TWSVTRMTNI SSSMNSNGNF QGFQFPWSLS  180
SITRETEQFT HHSNRMVVGL KVDGLSISEK PSQDNCSLQI DAHYMRKHPL FEVHDRKSYP  240
CIEDLDLLEG RSNKQYAIYY DEPIRDEMFD NVLLCSDHKP LDEGVSLSRA MTNNSSKSSQ  300
IGQGKTSARR KTTGKRIQKR DVVDLRTLLI NCAQAVSVSN HSLASDILKI IRHHASPTGD  360
DSQRLALCLA YCLDVRLTGT GSQIYHKFIT KRRNVKDILK VFHVCLSTCP FLRASHYFSN  420
RTIVDVSKGK PQVHIIDFGI CFGFQWPSLF EELAKIEDGP PKLRITGIEL PESGFRPYAR  480
SNNIGLRLAD YAKTFNIPFE YQHISSNKWE ALSPEDFNIE KDEVLIVNCI YRMKDLGDET  540
ISINSARSRV LNTIRMMKPK VFVQGVLNGS YGVPFFLTRF KEVMYHYNSL FDMLDKNIPR  600
DNETRMIIER DIYQYIMLNV IACEGPERIE RPESYKKWKV RNLKAGLVQL PLNPAIVRET  660
QDMVRKGYHK DFLVDEEDQW LVLGWKGRIL YASSTWQPND SGDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-413296978375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630113.10.0scarecrow-like protein 14
TrEMBLB8AM740.0B8AM74_ORYSI; Uncharacterized protein
STRINGORUFI03G25830.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-147GRAS family protein