PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013026-PA

Common Name

OsI_12397

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 325aa MW: 32517.2 Da PI: 8.9367

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013026-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ BGIOSGA013026-PA 44 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 104 57889*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.4E-33	46	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	47	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MAPAAGDDAV VPRKGAGGGG TTTPPPPPPA QQQQQQPLPP PPPQEQGLRC PRCDSPNTKF 60 CYYNNYSLSQ PRHFCKTCRR YWTKGGALRN VPVGGGCRKN KRSRSAAAAS RLSLNLPTGG 120 AVGMLPLPRL QSPAGGGVGH HQYVPFGEWP SGDIAGGNAV NGGGGHGAVS STIASSIESL 180 SFINQDLHWK LQQQRLATMF LGPPGSASAA AAAAQANDGG GNGAQATASG HAAGGGGGAF 240 MHMAGSVPSM EAAMPSATSW FMDSCSYGLP SPPPPATAAV AATTSSNLNS GGRSSGGGGG 300 DDNATSNCGS AIPAWGDIST FAMLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	298	GGRSSGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630014.1	1e-137	dof zinc finger protein DOF5.7
TrEMBL	A2XIY6	0.0	A2XIY6_ORYSI; Uncharacterized protein
STRING	OBART03G24480.1	1e-140	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-30	DOF zinc finger protein 1