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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA012779-PA | ||||||||
Common Name | OsI_11859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CAMTA | ||||||||
Protein Properties | Length: 1031aa MW: 115426 Da PI: 6.3763 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.9 | 1.3e-55 | 22 | 137 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 + +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fq BGIOSGA012779-PA 22 EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQ 114 459****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+ywlLee++++ivlvhylevk BGIOSGA012779-PA 115 RRTYWLLEEDFTHIVLVHYLEVK 137 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.074 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-75 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.5E-49 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00522 | 449 | 537 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 2.3E-7 | 450 | 526 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 3.89E-17 | 450 | 536 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.2E-7 | 450 | 535 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.38E-17 | 626 | 741 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-18 | 636 | 742 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.10E-13 | 641 | 739 | No hit | No description |
PROSITE profile | PS50297 | 19.067 | 647 | 741 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.9E-8 | 652 | 742 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.778 | 680 | 712 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.061 | 680 | 709 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 500 | 719 | 748 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.56E-9 | 847 | 905 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0082 | 854 | 876 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 855 | 884 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 856 | 875 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0051 | 877 | 899 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.267 | 878 | 902 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.1E-4 | 880 | 899 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MAETRKFLMP NQPPDISQMV LEARKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL 60 FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEEDFTHIVL VHYLEVKGVK QSFSRAKEEI MQLSGADSPS CSNSITSQNQ MTPQIMDAAE 180 SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIVMDNILY PSSSAICNQV 240 SGYHGELPPG TSNLNGHTFS HSDIARMFDD SSSGLRDISR TLFDSMPYDE HFSGYANGFM 300 EPTLHSSFSM IEANNLEDSS LLETYTSEAL YTNNLSQKEA DALSFAGISS PEVNGNKYTE 360 GSTKHPLLKQ LSLDLFKIES SGLKKHDSFS RWMSKELGEV VDLGIKSSSD ALWSSIEIVN 420 AADGPSAPTN EQLDAYAVSP SLAQDQLFSI LDISPSCSYI GLKTKVLVTG TFLASKENVE 480 NCKWSCMFGD VEVPAEVLAD GSLRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYRDSDA 540 QYMETSHSQA NGINEMHLQI RLEKLLTLGP DDNQLLVCGN EKLELINAIN SLMLDEKWSD 600 QGSPSGSKDV VTPRNQSLKK LMKEKLHCWL IYKIYDCEKG PNILGKEGQG IIHLAAALGF 660 DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRERTVGVL IANGAAAGAL TDPTSEFPSG 720 RTPADLASTN GHKGIAGFLA ESALTSHLSA LTLKESKDSN ADEACRLTIP EDLPEMNYGQ 780 LAVQDSHAES LKDSLSAVRK SAQAAARIFQ AFRVESFHRK KVVEYGDDDC GLSDEHTFSL 840 ISLQKVKQGQ HDTRLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKNYKK 900 VVWSVGIVEK VILRWRRKGR GLRGFRPEKQ LEGQTQIQPA KTEDEYDYLQ DGRRQAEGRL 960 QRALDRVRSM TQYPEAREQY RRLTTCVAEM QQSRMMQDEM LSEAAGADGS DFMNGLEDLI 1020 CRDDPQMTAI W |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49503 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115453328 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070350 | 0.0 | AK070350.1 Oryza sativa Japonica Group cDNA clone:J023052K16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631089.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A2XHH5 | 0.0 | A2XHH5_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI03G20520.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA03G21570.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |