PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 307aa MW: 32461.6 Da PI: 7.0516

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012748-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+ +v+++G+g+W++++ + g+ R+ k+c++rw +yl BGIOSGA012748-PA 14 KGPWTPEEDMVLASYVQEHGPGNWRAVPPRTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	43.7	6.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ E+ l++++ ++lG++ W++Ia++++ +Rt++++k++w+++l BGIOSGA012748-PA 67 RGGFSHHEERLILHLQALLGNR-WAAIASYLP-HRTDNDVKNFWNTHL 112 7889****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.963	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.94E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.75E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-22	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.356	66	116	IPR017930	Myb domain
SMART	SM00717	1.9E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-12	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.84E-11	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGRPPCCEKE GVKKGPWTPE EDMVLASYVQ EHGPGNWRAV PPRTGLLRCS KSCRLRWTNY 60 LRPGIRRGGF SHHEERLILH LQALLGNRWA AIASYLPHRT DNDVKNFWNT HLKKKLALTS 120 SSSSPPTPTT PLVARGQWER KLQTDIDLAR RALRDALSVD DAASPAMISS GPPAPAAAAA 180 YALSERNISV MLSGWAAPPP ARKGLSACNP AAATPTPGGA AAESASTAGA SSELTTDCCS 240 GGGDSSVSNC LPSSMLPACD DGDATATAAG VAPLSAIESW LLLDDSGEPQ LALDEQLLDV 300 ALRNYAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-24	14	116	27	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630096.1	0.0	myb-related protein 306
Swissprot	P81392	3e-94	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A2XHC4	0.0	A2XHC4_ORYSI; Uncharacterized protein
STRING	ORGLA03G0181800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-83	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]